As usual “It Depends” on what you’re shorting to.
But if you’re “shorting” exactly as you would wire a switch in place of the short there should be no physical damage. You might get a whack more switch bounce than the software expects though.
I haven’t dug through that usermod to see whether Top Echo and Bottom Echo are intended as inputs or outputs. You might want to have a look around for comments on that either in the code or around the forum…
What sensors are you planning to use?
If it’s HC-SR04 ultrasonic sensor then you have written on the board all 4 pins required (V+, trigger, echo, GND)